Misalignment estimation software system

A system of computer software, spacecraft, and ground system activity is described that enables spacecraft startrackers and inertial assemblies to be aligned and calibrated from the ground after the spacecraft has achieved orbit. The system generates in the uplink flow an exercise designed to render misalignments visible, and sends the exercise to the spacecraft where the spacecraft inserts the misalignment into the information in the form of attitude sensor error. The information is downlinked for processing into misalignment estimates to be used for correcting spacecraft model at data base.