GL4U: GeneLab for Colleges and Universities

GeneLab for Colleges and Universities (GL4U) will provide space biology-relevant training in bioinformatics to the next generation of scientists through direct and indirect approaches. The GeneLab (GL) team will host two annual data processing bootcamps, one for college-level students (direct) and one for college educators (indirect – Training of Trainers), in which participants learn to analyze space-relevant omics data hosted on GL. The first bootcamp took place in early June 2021 with about 30 SJSU undergraduate students and covered space biology-specific lectures and hands-on instruction using Jupyter Notebooks (JNs) for RNA sequence (RNAseq) data analysis. All training materials including the enclosed files listed below will be made publicly available on GitHub.

RNAseq Bootcamp Lectures (attached in combined file):

Introduction to NASA, Space Biology, GeneLab, and the Command Line:
NASA_GL_CL_Intro_FINAL.pdf - DRAFT from initial submission
NASA_SB_GL_CL_Intro_FULL.pdf - FINAL version presented during the bootcamp - only minor edits from the draft version

RNAseq and Data Processing Overview:
RNAseq_Overview_FINAL.pdf - DRAFT from initial submission
RNAseq_Overview_FULL.pdf - FINAL version presented during the bootcamp - only minor edits from the draft version

Overview of the Statistics Used for RNAseq Data Analysis:
SJSU_Statistics_Intro_Lecture_FINAL.pdf - DRAFT from initial submission
Statistics_Overview_FULL.pdf - FINAL version presented during the bootcamp - only minor edits from the draft version

Completed JNs in HTML format (attached in combined file):

Unix_Intro_JN_06-2021_completed.html
R_Intro_JN_06-2021_completed.html
RNAseq_fastq_to_counts_JN_06-2021_completed.html
RNAseq_DGE_JN_06-2021_completed.html

RNAseq Bootcamp Recordings (attached):

GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day1_Part_1_of_5.mp4
GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day1_Part_2_of_5.mp4
GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day1_Part_3_of_5.mp4
*There were issues with the part 4 recording so that is not available
GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day1_Part_5_of_5.mp4

GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day2_Part_1_of_3.mp4
GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day2_Part_2_of_3.mp4
GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day2_Part_3_of_3.mp4

GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day3_Part_1_of_4.mp4
GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day3_Part_2_of_4.mp4
GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day3_Part_3_of_4.mp4
GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day3_Part_4_of_4.mp4

GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day4_Part_1_of_4.mp4
GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day4_Part_2_of_4.mp4
GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day4_Part_3_of_4.mp4
GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day4_Part_4_of_4.mp4

GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day5_Part_1_of_4.mp4
GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day5_Part_2_of_4.mp4
GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day5_Part_3_of_4.mp4
GL4U_RNAseq_Bootcamp_June_2021_Pilot_Day5_Part_4_of_4.mp4